skimage.filters.rank.autolevel (image, selem) | Auto-level image using local histogram. |
skimage.filters.rank.autolevel_percentile (...) | Return greyscale local autolevel of an image. |
skimage.filters.rank.bottomhat (image, selem) | Local bottom-hat of an image. |
skimage.filters.rank.enhance_contrast (image, ...) | Enhance contrast of an image. |
skimage.filters.rank.enhance_contrast_percentile (...) | Enhance contrast of an image. |
skimage.filters.rank.entropy (image, selem[, ...]) | Local entropy. |
skimage.filters.rank.equalize (image, selem) | Equalize image using local histogram. |
skimage.filters.rank.geometric_mean (image, selem) | Return local geometric mean of an image. |
skimage.filters.rank.gradient (image, selem) | Return local gradient of an image (i.e. |
skimage.filters.rank.gradient_percentile (...) | Return local gradient of an image (i.e. |
skimage.filters.rank.maximum (image, selem[, ...]) | Return local maximum of an image. |
skimage.filters.rank.mean (image, selem[, ...]) | Return local mean of an image. |
skimage.filters.rank.mean_bilateral (image, selem) | Apply a flat kernel bilateral filter. |
skimage.filters.rank.mean_percentile (image, ...) | Return local mean of an image. |
skimage.filters.rank.median (image[, selem, ...]) | Return local median of an image. |
skimage.filters.rank.minimum (image, selem[, ...]) | Return local minimum of an image. |
skimage.filters.rank.modal (image, selem[, ...]) | Return local mode of an image. |
skimage.filters.rank.noise_filter (image, selem) | Noise feature. |
skimage.filters.rank.otsu (image, selem[, ...]) | Local Otsu’s threshold value for each pixel. |
skimage.filters.rank.percentile (image, selem) | Return local percentile of an image. |
skimage.filters.rank.pop (image, selem[, ...]) | Return the local number (population) of pixels. |
skimage.filters.rank.pop_bilateral (image, selem) | Return the local number (population) of pixels. |
skimage.filters.rank.pop_percentile (image, selem) | Return the local number (population) of pixels. |
skimage.filters.rank.subtract_mean (image, selem) | Return image subtracted from its local mean. |
skimage.filters.rank.subtract_mean_percentile (...) | Return image subtracted from its local mean. |
skimage.filters.rank.sum (image, selem[, ...]) | Return the local sum of pixels. |
skimage.filters.rank.sum_bilateral (image, selem) | Apply a flat kernel bilateral filter. |
skimage.filters.rank.sum_percentile (image, selem) | Return the local sum of pixels. |
skimage.filters.rank.threshold (image, selem) | Local threshold of an image. |
skimage.filters.rank.threshold_percentile (...) | Local threshold of an image. |
skimage.filters.rank.tophat (image, selem[, ...]) | Local top-hat of an image. |
skimage.filters.rank.windowed_histogram (...) | Normalized sliding window histogram |
skimage.filters.rank.autolevel(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Auto-level image using local histogram.
This filter locally stretches the histogram of greyvalues to cover the entire range of values from “white” to “black”.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
>>> from skimage import data >>> from skimage.morphology import disk >>> from skimage.filters.rank import autolevel >>> img = data.camera() >>> auto = autolevel(img, disk(5))
skimage.filters.rank.autolevel_percentile(image, selem, out=None, mask=None, shift_x=False, shift_y=False, p0=0, p1=1)
[source]
Return greyscale local autolevel of an image.
This filter locally stretches the histogram of greyvalues to cover the entire range of values from “white” to “black”.
Only greyvalues between percentiles [p0, p1] are considered in the filter.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). p0, p1 : float in [0, ..., 1] Define the [p0, p1] percentile interval to be considered for computing the value. |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
skimage.filters.rank.bottomhat(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Local bottom-hat of an image.
This filter computes the morphological closing of the image and then subtracts the result from the original image.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : 2-D array Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
>>> from skimage import data >>> from skimage.morphology import disk >>> from skimage.filters.rank import bottomhat >>> img = data.camera() >>> out = bottomhat(img, disk(5))
skimage.filters.rank.enhance_contrast(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Enhance contrast of an image.
This replaces each pixel by the local maximum if the pixel greyvalue is closer to the local maximum than the local minimum. Otherwise it is replaced by the local minimum.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). Returns Output image. out : 2-D array (same dtype as input image) The result of the local enhance_contrast. |
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>>> from skimage import data >>> from skimage.morphology import disk >>> from skimage.filters.rank import enhance_contrast >>> img = data.camera() >>> out = enhance_contrast(img, disk(5))
skimage.filters.rank.enhance_contrast_percentile(image, selem, out=None, mask=None, shift_x=False, shift_y=False, p0=0, p1=1)
[source]
Enhance contrast of an image.
This replaces each pixel by the local maximum if the pixel greyvalue is closer to the local maximum than the local minimum. Otherwise it is replaced by the local minimum.
Only greyvalues between percentiles [p0, p1] are considered in the filter.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). p0, p1 : float in [0, ..., 1] Define the [p0, p1] percentile interval to be considered for computing the value. |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
skimage.filters.rank.entropy(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Local entropy.
The entropy is computed using base 2 logarithm i.e. the filter returns the minimum number of bits needed to encode the local greylevel distribution.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : ndarray (double) Output image. |
[R275] | http://en.wikipedia.org/wiki/Entropy_(information_theory) |
>>> from skimage import data >>> from skimage.filters.rank import entropy >>> from skimage.morphology import disk >>> img = data.camera() >>> ent = entropy(img, disk(5))
skimage.filters.rank.equalize(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Equalize image using local histogram.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
>>> from skimage import data >>> from skimage.morphology import disk >>> from skimage.filters.rank import equalize >>> img = data.camera() >>> equ = equalize(img, disk(5))
skimage.filters.rank.geometric_mean(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Return local geometric mean of an image.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
[R276] | Gonzalez, R. C. and Wood, R. E. “Digital Image Processing (3rd Edition).” Prentice-Hall Inc, 2006. |
>>> from skimage import data >>> from skimage.morphology import disk >>> from skimage.filters.rank import mean >>> img = data.camera() >>> avg = geometric_mean(img, disk(5))
skimage.filters.rank.gradient(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Return local gradient of an image (i.e. local maximum - local minimum).
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
>>> from skimage import data >>> from skimage.morphology import disk >>> from skimage.filters.rank import gradient >>> img = data.camera() >>> out = gradient(img, disk(5))
skimage.filters.rank.gradient_percentile(image, selem, out=None, mask=None, shift_x=False, shift_y=False, p0=0, p1=1)
[source]
Return local gradient of an image (i.e. local maximum - local minimum).
Only greyvalues between percentiles [p0, p1] are considered in the filter.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). p0, p1 : float in [0, ..., 1] Define the [p0, p1] percentile interval to be considered for computing the value. |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
skimage.filters.rank.maximum(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Return local maximum of an image.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
See also
The lower algorithm complexity makes skimage.filters.rank.maximum
more efficient for larger images and structuring elements.
>>> from skimage import data >>> from skimage.morphology import disk >>> from skimage.filters.rank import maximum >>> img = data.camera() >>> out = maximum(img, disk(5))
skimage.filters.rank.mean(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Return local mean of an image.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
>>> from skimage import data >>> from skimage.morphology import disk >>> from skimage.filters.rank import mean >>> img = data.camera() >>> avg = mean(img, disk(5))
skimage.filters.rank.mean_bilateral(image, selem, out=None, mask=None, shift_x=False, shift_y=False, s0=10, s1=10)
[source]
Apply a flat kernel bilateral filter.
This is an edge-preserving and noise reducing denoising filter. It averages pixels based on their spatial closeness and radiometric similarity.
Spatial closeness is measured by considering only the local pixel neighborhood given by a structuring element.
Radiometric similarity is defined by the greylevel interval [g-s0, g+s1] where g is the current pixel greylevel.
Only pixels belonging to the structuring element and having a greylevel inside this interval are averaged.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). s0, s1 : int Define the [s0, s1] interval around the greyvalue of the center pixel to be considered for computing the value. |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
See also
skimage.filters.denoise_bilateral
>>> from skimage import data >>> from skimage.morphology import disk >>> from skimage.filters.rank import mean_bilateral >>> img = data.camera().astype(np.uint16) >>> bilat_img = mean_bilateral(img, disk(20), s0=10,s1=10)
skimage.filters.rank.mean_percentile(image, selem, out=None, mask=None, shift_x=False, shift_y=False, p0=0, p1=1)
[source]
Return local mean of an image.
Only greyvalues between percentiles [p0, p1] are considered in the filter.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). p0, p1 : float in [0, ..., 1] Define the [p0, p1] percentile interval to be considered for computing the value. |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
skimage.filters.rank.median(image, selem=None, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Return local median of an image.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array, optional The neighborhood expressed as a 2-D array of 1’s and 0’s. If None, a full square of size 3 is used. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
>>> from skimage import data >>> from skimage.morphology import disk >>> from skimage.filters.rank import median >>> img = data.camera() >>> med = median(img, disk(5))
skimage.filters.rank.minimum(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Return local minimum of an image.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
See also
The lower algorithm complexity makes skimage.filters.rank.minimum
more efficient for larger images and structuring elements.
>>> from skimage import data >>> from skimage.morphology import disk >>> from skimage.filters.rank import minimum >>> img = data.camera() >>> out = minimum(img, disk(5))
skimage.filters.rank.modal(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Return local mode of an image.
The mode is the value that appears most often in the local histogram.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
>>> from skimage import data >>> from skimage.morphology import disk >>> from skimage.filters.rank import modal >>> img = data.camera() >>> out = modal(img, disk(5))
skimage.filters.rank.noise_filter(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Noise feature.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
[R277] | N. Hashimoto et al. Referenceless image quality evaluation for whole slide imaging. J Pathol Inform 2012;3:9. |
>>> from skimage import data >>> from skimage.morphology import disk >>> from skimage.filters.rank import noise_filter >>> img = data.camera() >>> out = noise_filter(img, disk(5))
skimage.filters.rank.otsu(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Local Otsu’s threshold value for each pixel.
Parameters: |
image : ndarray Image array (uint8 array). selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : ndarray If None, a new array will be allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
[R278] | http://en.wikipedia.org/wiki/Otsu’s_method |
>>> from skimage import data >>> from skimage.filters.rank import otsu >>> from skimage.morphology import disk >>> img = data.camera() >>> local_otsu = otsu(img, disk(5)) >>> thresh_image = img >= local_otsu
skimage.filters.rank.percentile(image, selem, out=None, mask=None, shift_x=False, shift_y=False, p0=0)
[source]
Return local percentile of an image.
Returns the value of the p0 lower percentile of the local greyvalue distribution.
Only greyvalues between percentiles [p0, p1] are considered in the filter.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). p0 : float in [0, ..., 1] Set the percentile value. |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
skimage.filters.rank.pop(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Return the local number (population) of pixels.
The number of pixels is defined as the number of pixels which are included in the structuring element and the mask.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
>>> from skimage.morphology import square >>> import skimage.filters.rank as rank >>> img = 255 * np.array([[0, 0, 0, 0, 0], ... [0, 1, 1, 1, 0], ... [0, 1, 1, 1, 0], ... [0, 1, 1, 1, 0], ... [0, 0, 0, 0, 0]], dtype=np.uint8) >>> rank.pop(img, square(3)) array([[4, 6, 6, 6, 4], [6, 9, 9, 9, 6], [6, 9, 9, 9, 6], [6, 9, 9, 9, 6], [4, 6, 6, 6, 4]], dtype=uint8)
skimage.filters.rank.pop_bilateral(image, selem, out=None, mask=None, shift_x=False, shift_y=False, s0=10, s1=10)
[source]
Return the local number (population) of pixels.
The number of pixels is defined as the number of pixels which are included in the structuring element and the mask. Additionally pixels must have a greylevel inside the interval [g-s0, g+s1] where g is the greyvalue of the center pixel.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). s0, s1 : int Define the [s0, s1] interval around the greyvalue of the center pixel to be considered for computing the value. |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
>>> from skimage.morphology import square >>> import skimage.filters.rank as rank >>> img = 255 * np.array([[0, 0, 0, 0, 0], ... [0, 1, 1, 1, 0], ... [0, 1, 1, 1, 0], ... [0, 1, 1, 1, 0], ... [0, 0, 0, 0, 0]], dtype=np.uint16) >>> rank.pop_bilateral(img, square(3), s0=10, s1=10) array([[3, 4, 3, 4, 3], [4, 4, 6, 4, 4], [3, 6, 9, 6, 3], [4, 4, 6, 4, 4], [3, 4, 3, 4, 3]], dtype=uint16)
skimage.filters.rank.pop_percentile(image, selem, out=None, mask=None, shift_x=False, shift_y=False, p0=0, p1=1)
[source]
Return the local number (population) of pixels.
The number of pixels is defined as the number of pixels which are included in the structuring element and the mask.
Only greyvalues between percentiles [p0, p1] are considered in the filter.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). p0, p1 : float in [0, ..., 1] Define the [p0, p1] percentile interval to be considered for computing the value. |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
skimage.filters.rank.subtract_mean(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Return image subtracted from its local mean.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
>>> from skimage import data >>> from skimage.morphology import disk >>> from skimage.filters.rank import subtract_mean >>> img = data.camera() >>> out = subtract_mean(img, disk(5))
skimage.filters.rank.subtract_mean_percentile(image, selem, out=None, mask=None, shift_x=False, shift_y=False, p0=0, p1=1)
[source]
Return image subtracted from its local mean.
Only greyvalues between percentiles [p0, p1] are considered in the filter.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). p0, p1 : float in [0, ..., 1] Define the [p0, p1] percentile interval to be considered for computing the value. |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
skimage.filters.rank.sum(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Return the local sum of pixels.
Note that the sum may overflow depending on the data type of the input array.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
>>> from skimage.morphology import square >>> import skimage.filters.rank as rank >>> img = np.array([[0, 0, 0, 0, 0], ... [0, 1, 1, 1, 0], ... [0, 1, 1, 1, 0], ... [0, 1, 1, 1, 0], ... [0, 0, 0, 0, 0]], dtype=np.uint8) >>> rank.sum(img, square(3)) array([[1, 2, 3, 2, 1], [2, 4, 6, 4, 2], [3, 6, 9, 6, 3], [2, 4, 6, 4, 2], [1, 2, 3, 2, 1]], dtype=uint8)
skimage.filters.rank.sum_bilateral(image, selem, out=None, mask=None, shift_x=False, shift_y=False, s0=10, s1=10)
[source]
Apply a flat kernel bilateral filter.
This is an edge-preserving and noise reducing denoising filter. It averages pixels based on their spatial closeness and radiometric similarity.
Spatial closeness is measured by considering only the local pixel neighborhood given by a structuring element (selem).
Radiometric similarity is defined by the greylevel interval [g-s0, g+s1] where g is the current pixel greylevel.
Only pixels belonging to the structuring element AND having a greylevel inside this interval are summed.
Note that the sum may overflow depending on the data type of the input array.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). s0, s1 : int Define the [s0, s1] interval around the greyvalue of the center pixel to be considered for computing the value. |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
See also
skimage.filters.denoise_bilateral
>>> from skimage import data >>> from skimage.morphology import disk >>> from skimage.filters.rank import sum_bilateral >>> img = data.camera().astype(np.uint16) >>> bilat_img = sum_bilateral(img, disk(10), s0=10, s1=10)
skimage.filters.rank.sum_percentile(image, selem, out=None, mask=None, shift_x=False, shift_y=False, p0=0, p1=1)
[source]
Return the local sum of pixels.
Only greyvalues between percentiles [p0, p1] are considered in the filter.
Note that the sum may overflow depending on the data type of the input array.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). p0, p1 : float in [0, ..., 1] Define the [p0, p1] percentile interval to be considered for computing the value. |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
skimage.filters.rank.threshold(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Local threshold of an image.
The resulting binary mask is True if the greyvalue of the center pixel is greater than the local mean.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
>>> from skimage.morphology import square >>> from skimage.filters.rank import threshold >>> img = 255 * np.array([[0, 0, 0, 0, 0], ... [0, 1, 1, 1, 0], ... [0, 1, 1, 1, 0], ... [0, 1, 1, 1, 0], ... [0, 0, 0, 0, 0]], dtype=np.uint8) >>> threshold(img, square(3)) array([[0, 0, 0, 0, 0], [0, 1, 1, 1, 0], [0, 1, 0, 1, 0], [0, 1, 1, 1, 0], [0, 0, 0, 0, 0]], dtype=uint8)
skimage.filters.rank.threshold_percentile(image, selem, out=None, mask=None, shift_x=False, shift_y=False, p0=0)
[source]
Local threshold of an image.
The resulting binary mask is True if the greyvalue of the center pixel is greater than the local mean.
Only greyvalues between percentiles [p0, p1] are considered in the filter.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). p0 : float in [0, ..., 1] Set the percentile value. |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
skimage.filters.rank.tophat(image, selem, out=None, mask=None, shift_x=False, shift_y=False)
[source]
Local top-hat of an image.
This filter computes the morphological opening of the image and then subtracts the result from the original image.
Parameters: |
image : 2-D array (uint8, uint16) Input image. selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : 2-D array (same dtype as input) If None, a new array is allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). |
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Returns: |
out : 2-D array (same dtype as input image) Output image. |
>>> from skimage import data >>> from skimage.morphology import disk >>> from skimage.filters.rank import tophat >>> img = data.camera() >>> out = tophat(img, disk(5))
skimage.filters.rank.windowed_histogram(image, selem, out=None, mask=None, shift_x=False, shift_y=False, n_bins=None)
[source]
Normalized sliding window histogram
Parameters: |
image : ndarray Image array (uint8 array). selem : 2-D array The neighborhood expressed as a 2-D array of 1’s and 0’s. out : ndarray If None, a new array will be allocated. mask : ndarray Mask array that defines (>0) area of the image included in the local neighborhood. If None, the complete image is used (default). shift_x, shift_y : int Offset added to the structuring element center point. Shift is bounded to the structuring element sizes (center must be inside the given structuring element). n_bins : int or None The number of histogram bins. Will default to |
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Returns: |
out : 3-D array with float dtype of dimensions (H,W,N), where (H,W) are the dimensions of the input image and N is n_bins or |
>>> from skimage import data >>> from skimage.filters.rank import windowed_histogram >>> from skimage.morphology import disk >>> img = data.camera() >>> hist_img = windowed_histogram(img, disk(5))
© 2011 the scikit-image team
Licensed under the BSD 3-clause License.
http://scikit-image.org/docs/0.13.x/api/skimage.filters.rank.html