sklearn.isotonic.IsotonicRegression

class sklearn.isotonic.IsotonicRegression(y_min=None, y_max=None, increasing=True, out_of_bounds=’nan’) [source]

Isotonic regression model.

The isotonic regression optimization problem is defined by:

min sum w_i (y[i] - y_[i]) ** 2

subject to y_[i] <= y_[j] whenever X[i] <= X[j]
and min(y_) = y_min, max(y_) = y_max

where:

• y[i] are inputs (real numbers)
• y_[i] are fitted
• X specifies the order. If X is non-decreasing then y_ is non-decreasing.
• w[i] are optional strictly positive weights (default to 1.0)

Read more in the User Guide.

Parameters:

y_min : optional, default: None If not None, set the lowest value of the fit to y_min. y_max : optional, default: None If not None, set the highest value of the fit to y_max. increasing : boolean or string, optional, default: True If boolean, whether or not to fit the isotonic regression with y increasing or decreasing. The string value “auto” determines whether y should increase or decrease based on the Spearman correlation estimate’s sign. out_of_bounds : string, optional, default: “nan” The out_of_bounds parameter handles how x-values outside of the training domain are handled. When set to “nan”, predicted y-values will be NaN. When set to “clip”, predicted y-values will be set to the value corresponding to the nearest train interval endpoint. When set to “raise”, allow interp1d to throw ValueError.

Attributes:

X_min_ : float Minimum value of input array X_ for left bound. X_max_ : float Maximum value of input array X_ for right bound. f_ : function The stepwise interpolating function that covers the input domain X.

Notes

Ties are broken using the secondary method from Leeuw, 1977.

References

Isotonic Median Regression: A Linear Programming Approach Nilotpal Chakravarti Mathematics of Operations Research Vol. 14, No. 2 (May, 1989), pp. 303-308

Isotone Optimization in R : Pool-Adjacent-Violators Algorithm (PAVA) and Active Set Methods Leeuw, Hornik, Mair Journal of Statistical Software 2009

Correctness of Kruskal’s algorithms for monotone regression with ties Leeuw, Psychometrica, 1977

Methods

fit(X, y[, sample_weight])	Fit the model using X, y as training data.
fit_transform(X[, y])	Fit to data, then transform it.
get_params([deep])	Get parameters for this estimator.
predict(T)	Predict new data by linear interpolation.
score(X, y[, sample_weight])	Returns the coefficient of determination R^2 of the prediction.
set_params(**params)	Set the parameters of this estimator.
transform(T)	Transform new data by linear interpolation

__init__(y_min=None, y_max=None, increasing=True, out_of_bounds=’nan’) [source]

fit(X, y, sample_weight=None) [source]

Fit the model using X, y as training data.

Parameters:	X : array-like, shape=(n_samples,) Training data. y : array-like, shape=(n_samples,) Training target. sample_weight : array-like, shape=(n_samples,), optional, default: None Weights. If set to None, all weights will be set to 1 (equal weights).
Returns:	self : object Returns an instance of self.

Notes

X is stored for future use, as transform needs X to interpolate new input data.

fit_transform(X, y=None, **fit_params) [source]

Fit to data, then transform it.

Fits transformer to X and y with optional parameters fit_params and returns a transformed version of X.

Parameters:	X : numpy array of shape [n_samples, n_features] Training set. y : numpy array of shape [n_samples] Target values.
Returns:	X_new : numpy array of shape [n_samples, n_features_new] Transformed array.

get_params(deep=True) [source]

Get parameters for this estimator.

Parameters:	deep : boolean, optional If True, will return the parameters for this estimator and contained subobjects that are estimators.
Returns:	params : mapping of string to any Parameter names mapped to their values.

predict(T) [source]

Predict new data by linear interpolation.

Parameters:	T : array-like, shape=(n_samples,) Data to transform.
Returns:	T_ : array, shape=(n_samples,) Transformed data.

score(X, y, sample_weight=None) [source]

Returns the coefficient of determination R^2 of the prediction.

The coefficient R^2 is defined as (1 - u/v), where u is the residual sum of squares ((y_true - y_pred) ** 2).sum() and v is the total sum of squares ((y_true - y_true.mean()) ** 2).sum(). The best possible score is 1.0 and it can be negative (because the model can be arbitrarily worse). A constant model that always predicts the expected value of y, disregarding the input features, would get a R^2 score of 0.0.

Parameters:

X : array-like, shape = (n_samples, n_features) Test samples. For some estimators this may be a precomputed kernel matrix instead, shape = (n_samples, n_samples_fitted], where n_samples_fitted is the number of samples used in the fitting for the estimator. y : array-like, shape = (n_samples) or (n_samples, n_outputs) True values for X. sample_weight : array-like, shape = [n_samples], optional Sample weights.

Returns:

score : float R^2 of self.predict(X) wrt. y.

set_params(**params) [source]

Set the parameters of this estimator.

The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form <component>__<parameter> so that it’s possible to update each component of a nested object.

Returns:	self

transform(T) [source]

Transform new data by linear interpolation

Parameters:	T : array-like, shape=(n_samples,) Data to transform.
Returns:	T_ : array, shape=(n_samples,) The transformed data

Examples using sklearn.isotonic.IsotonicRegression

Isotonic Regression